NGS analysis
Your partner for Next Generation sequencing based experiments
The UBEC provides bioinformatics support and services as an expertise centre within the Center for Molecular Medicine at the UMC Utrecht
We run and help maintain the Illumina Analysis Pipeline developed within the CMM. This pipeline can perform the different steps required to go from sequencing output (FASTQ) to mapped data (BAM) or called and annotated variants (VCF). We offer the following services (*prices ex VAT):
| Analysis | Unit | Service fee * | Data type |
|---|---|---|---|
| Mapping (WGS) | sample | € 50 | DNA |
| germline SNV + InDel | sample | € 0 | DNA |
| CNV + SV calling | sample | € 15 | DNA |
| somatic calling | WGS tumor/normal sample | € 10 | DNA |
| Mapping (RNA) | sample | € 5 | RNA |
| read count analysis | sample | € 5 | mRNA |
| Differential expression analysis + figures | sample | € 5 | mRNA |
Consultancy service
For expertise advice on your research and the possibilities UBEC offers to get the most out of your data: request a meeting by emailing us. Experimental design, data management, bioinformatics analysis, results and follow-up experiments are discussed. The facility manager ensures that experts from participating organizations are present during this meeting.
You can request a meeting at bec@umcutrecht.nl.